In addition to the comprehensive Specialist School Program offered, student at both campuses access regular and specialist school programs as appropriate. Programs with host schools are supported by staff from either Hampden Specialist School or the host school or both of these .

Other programs include community based excursions and camps, Riding for the Disabled and Sailability.

At Secondary level all students have a Managed Individual Pathways Plan. Work Training and VCAL (Victorian Certificate in Applied Learning) are also offered at this level.